After not being able to get beam through the emittance meter. I diagnosed that the plates was not biased (reason yet unknow).

I swapped the cables from the plates such that it looks like the picture below. With this, I was able to take an emittance scan with the previous parameters.

Varying the optics affect the shape and position of the emittance so I believe this is a real signal.

Keeping this configuration until I finish my measurement.